Phylogenetic Grouping and Antibiogram of ESBL-Producing Escherichia coli Isolated from Bovine Mastitis

Y. H. Tarazi, M. H. Gharaibeh, H. A. Al-Hurani, Z. Ismail

Abstract

Escherichia coli (E. coli) is a major cause of mastitis in dairy cattle. Multidrug resistant E. coli poses an important public health threat due to the widespread antimicrobial resistance genes that can transmit to human pathogenic E. coli through consuming contaminated milk. This study aimed to determine the phylogenetic groups and antimicrobial resistance profile of E. coli isolates from bovine clinical mastitis cases. A total of 380 milk samples were collected from dairy farms in Jordan. E. coli was cultured using routine bacterial culture methods and identified initially based on morphological and biochemical characteristics. Suspected bacteria were then confirmed by detecting 16s rRNA gene using traditional PCR methods. The phylogenetic grouping was performed using triplex PCR. The antimicrobial resistance profile was determined using a disc diffusion test followed by the double disc diffusion test to detect ESβLs-producing strains and the syndromic multiplex PCR (mPCR) to detect ESβLs genes. A total of 74 (19.4%) of E. coli strains were isolated from the collected milk samples. The majority of the isolates (52 or 70%) belonged to phylogenetic group A, followed by 13 (17.5%), 7 (9.5%), and 2 (2.7%) isolates that belonged to phylogenetic groups D, B1, and B2, respectively. Sixty-three (85.1%) isolates showed resistance to at least 2 antimicrobial agents, with the highest resistance rates detected against amoxicillin (94.6%), tetracycline (75.7%), and streptomycin (66.2%). Sixty-three (85.1%) isolates showed resistance to at least 2 antimicrobial agents and 23 (31%) isolates showed resistance to at least 2 beta lactam antimicrobial agents. Twenty-two out of 23 (95.6%) of multi-beta lactam resistant isolates were ESβL positive, 22 isolates (100%) carried blaCTX-M gene, and 20 isolates (86.9%) carried the blaTEM gene, while none of the isolates carried the blaSHV gene. The results of this study demonstrate a high prevalence of multidrug resistant, ESβLs-producing E. coli in bovine mastitis, which may represent a serious threat to public health due to the high risk of dissemination of antimicrobial resistance genes through consumption of contaminated milk.

References

Alekish, M. O., K. M. Al-Qudah, & A. Al-Saleh. 2013. Prevalence of antimicrobial resistance among bacterial pathogens isolated from bovine mastitis in northern Jordan. Rev. Med. Vet. 164:319-326.
Ali, T., S. Ur Rahman, L. Zhang, M. Shahid, S. Zhang, G. Liu, J. Gao, & B. Han. 2016. ESBL-producing Escherichia coli from cows suffering mastitis in China contain clinical class 1 integrons with CTX-M linked to ISCR1. Front. Microbiol. 7:1931. https://doi.org/10.3389/fmicb.2016.01931
Antanaitis, R., V. Juozaitienė, V. Jonike, W. Baumgartner, & A. Paulauskas. 2022. Subclinical mastitis detected during the last gestation period can increase the risk of stillbirth in dairy calves. Animals 12:1394. https://doi.org/10.3390/ani12111394
Aworh, M. K., J. K. P. Kwaga, R. S. Hendriksen, C. O. Emmanuel, & S. Thakur.  2021. Genetic relatedness of multidrug resistant Escherichia coli isolated from humans, chickens and poultry environments. Antimicrob. Resist. Infect. Control 10:58. https://doi.org/10.1186/s13756-021-00930-x
Batchoun, R. G., S. F. Swedan, & A. M. Shurman. 2009. Extended spectrum beta-lactamases among gram-negative bacterial isolates from clinical specimens in three major hospitals in Northern Jordan. Int. J. Microbiol. 2009:513874. https://doi.org/10.1155/2009/513874
Blum, S. E. & G. Leitner. 2013. Genotyping and virulence factors assessment of bovine mastitis Escherichia coli. Vet. Microbiol. 163:305-312. https://doi.org/10.1016/j.vetmic.2012.12.037
Bonnet, M., J. C. Lagier, D. Raoult, & S. Khelaifia. 2019. Bacterial culture through selective and non-selective conditions: The evolution of culture media in clinical microbiology. New Microbes New Infect. 34:100622. https://doi.org/10.1016/j.nmni.2019.100622
Bubpamala, J., P. Khuntayaporn, K. Thirapanmethee, P. Montakantikul, P. Santanirand, & M. T. Chomnawang. 2018. Phenotypic and genotypic characterizations of extended-spectrum beta-lactamase-producing Escherichia coli in Thailand. Infect. Drug Resist. 11:2151-2157. https://doi.org/10.2147/IDR.S174506
Castanheira, M., P. J. Simner, & P. A. Bradford. 2021. Extended-spectrum β-lactamases: An update on their characteristics, epidemiology and detection. JAC Antimicrobial Resistance 3:dlab092. https://doi.org/10.1093/jacamr/dlab092
Clermont, O., S. Bonacorsi, & E. Bingen. 2000. Rapid and simple determination of the Escherichia coli phylogenetic group. Appl. Environ. Microbiol. 66:4555-4558. https://doi.org/10.1128/AEM.66.10.4555-4558.2000
Fahim, K. M., E. Ismael, H. S. Khalefa, H. S. Farag, & D. A. Hamza. 2019. Isolation and characterization of E. coli strains causing intramammary infections from dairy animals and wild birds. Int. J. Vet. Sci. Med. 7:61-70. https://doi.org/10.1080/23144599.2019.1691378
Freitag, C., G. B. Michael, K. Kadlec, M. Hassel, & S. Schwarz. 2017. Detection of plasmid-borne extended-spectrum β-lactamase (ESBL) genes in Escherichia coli isolates from bovine mastitis. Vet. Microbiol. 200:151-156. https://doi.org/10.1016/j.vetmic.2016.08.010
Gautam, V., A. Thakur, M. Sharma, A. Singh, S. Bansal, A. Sharma, A. Kapil, B. K. Das, S. Sistla, C. C. Parija, B. Veeraraghavan, J. A. J. Prakash, K. Walia, V. C. Ohri, & P. Ray. 2019. Molecular characterization of extended-spectrum β-lactamases among clinical isolates of Escherichia coli and Klebsiella pneumoniae: A multi-centric study from tertiary care hospitals in India. Indian J. Med. Res. 149:208-215. https://doi.org/10.4103/ijmr.IJMR_172_18
Hota, A., K. Jambagi, & S. Swain. 2020. Bovine mastitis: Pathogenesis and susceptibility. Agro Economist - An International Journal 7:107-110.
Ismail, Z. B. & S. M. Abutarbush. 2020. Molecular characterization of antimicrobial resistance and virulence genes of Escherichia coli isolates from bovine mastitis. Vet. World. 13:1588-1593. https://doi.org/10.14202/vetworld.2020.1588-1593
Ju, T. & B. Willing. 2018. Isolation of commensal Escherichia coli strains from feces of healthy laboratory mice or rats. Bio-protoc. 8e2780. https://doi.org/10.21769/BioProtoc.2780
Kempf, F., C. Slugocki, S. F. Blum, G. Leitner, & P. Germon. 2016. Genomic comparative study of bovine mastitis Escherichia coli. PLoS ONE 11:e0147954. https://doi.org/10.1371/journal.pone.0147954
Lei, T., W. Tian, L. He, X. H. Huang, Y. X. Sun, Y. T. Deng, Y. Sun, D. H., C. M. Wu, L. Z. Huang, J. Z. Shen, & J. H. Liu. 2010. Antimicrobial resistance in Escherichia coli isolates from food animals, animal food products and companion animals in China. Vet. Microbiol. 146:85-89. https://doi.org/10.1016/j.vetmic.2010.04.025
Liu, Y. G. Liu, W. Liu, Y. Liu, T. Ali, W. Chen, J. Yin, & B. Han. 2014. Phylogenetic group, virulence factors and antimicrobial resistance of Escherichia coli associated with bovine mastitis. Res. Microbiol. 165:273-7. https://doi.org/10.1016/j.resmic.2014.03.007
Mbindyo, C. M., G. C. Gitao, & C. M. Mulei. 2020. Prevalence, etiology, and risk factors of mastitis in dairy cattle in Embu and Kajiado Counties, Kenya. Vet. Med. Int. 2020:8831172. https://doi.org/10.1155/2020/8831172
Mwambete, K. D. & A. R. Kamuhabwa. 2014. Resistance of commensal intestinal Escherichia coli and other enterics to co-trimoxazole and commonly used antibiotics in HIV/AIDS patients. Clinical Microbiology: Open Access 3:1000134. https://doi.org/10.4172/2327-5073.1000134
Obaidat, M. M., A. E. Bani Salman, A. A. Davis, & A. A. Roess. 2018. Majordiseases, extensive misuse, and high antimicrobial resistance of Escherichia coli in large- and small-scale dairy cattle farms in Jordan. J. Dairy Sci. 101:2324–2334. https://doi.org/10.3168/jds.2017-13665
Ohnishi, M., A. T. Okatani, K. Harada, T. Sawada, K. Marumo, M. Murakami, R. Sato, H. Esaki, K. Shimura, H. Kato, N. Uchida, & T. Takahashi. 2013. Genetic characteristics of CTX-M-type extended-spectrum-β-lactamase (ESBL)-producing enterobacteriaceae involved in mastitis cases on Japanese dairy farms, 2007 to 2011. J. Clin. Microbiol. 51:3117-3122. https://doi.org/10.1128/JCM.00920-13
Salah, M. A. A., E. F. Badran, & A. A. Shehabi. 2013. High incidence of multidrug resistant Escherichia coli producing CTX-M-type ESBLs colonizing the intestine of Jordanian infants. Int. Arab. J. Antimicrob. Agents. 3:1-8.
Su, Y., C. Y. Yu, Y. Tsai, S. H. Wang, C. Lee, & C. Chu. 2016. Fluoroquinolone-resistant and extended-spectrum β-lactamase-producing Escherichia coli from the milk of cows with clinical mastitis in Southern Taiwan. J. Microbiol. Immunol. Infect. 49:892-901. https://doi.org/10.1016/j.jmii.2014.10.003
Timofte, D., I. E. Maciuca, N. J. Evans, H. Williams, A. Wattret, J. C. Fick, & N. J. Williams. 2014. Detection and molecular characterization of Escherichia coli CTX-M-15 and Klebsiella pneumoniae SHV-12 β-lactamases from bovine mastitis isolates in the United Kingdom. Antimicrob. Agents Chemother. 58:789-794. https://doi.org/10.1128/AAC.00752-13
Valat, C., F. Auvray, K. Forest, V. Métayer, E. Gay, C. Peytavin de Garam, J.-Y. Madec, & M. Haenni. 2012. Phylogenetic grouping and virulence potential of extended-spectrum-β-lactamase-producing Escherichia coli strains in cattle. Appl. Environmen. Microbiol. 78:4677–4682. https://doi.org/10.1128/AEM.00351-12
Yılmaz, E. E. & Z. Aslantaş. 2020. Phylogenetic group/subgroups distributions, virulence factors, and antimicrobial susceptibility of Escherichia coli strains from urinary tract infections in Hatay. Rev. Soc. Bras. Med. Trop. 53:e20190429. https://doi.org/10.1590/0037-8682-0429-2019
Yoon, S. & Y. J. Lee. 2022. Molecular characteristics of Escherichia coli from bulk tank milk in Korea. J. Vet. Sci. 23:e9. https://doi.org/10.4142/jvs.21084
Weinstein, M. P. & J. S. Lewis. 2020. The clinical and laboratory standards institute subcommittee on antimicrobial susceptibility testing: Background, organization, functions, and processes. J. Clin. Microbiol. 58:e01864-19. https://doi.org/10.1128/JCM.01864-19

Authors

Y. H. Tarazi
tarazi@just.edu.jo (Primary Contact)
M. H. Gharaibeh
H. A. Al-Hurani
Z. Ismail
TaraziY. H., GharaibehM. H., Al-HuraniH. A., & IsmailZ. (2023). Phylogenetic Grouping and Antibiogram of ESBL-Producing Escherichia coli Isolated from Bovine Mastitis. Tropical Animal Science Journal, 46(4), 410-417. https://doi.org/10.5398/tasj.2023.46.4.410

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