Preliminary Study of Buffer Ratio in Protein Extraction from Placental Cotyledons of Kedah-Kelantan Cattle
Abstract
Protein extraction is a preliminary step of protein purification which mainly focus on maximization of total protein yield. The heterogeneous properties cause diversification of protein; therefore, there is no absolute protocol in protein extraction. The ratio of buffer gives different protein concentrations in different types of mammalian tissues, and this condition leads to the study of optimization of buffer ratio to obtain a better total protein yield. The objectives of this study were to compare the total protein yield based on three different ratios of buffer used. The phosphate buffer saline (PBS), radioimmunoprecipitation assay (RIPA) buffer, and RIPA buffer with the addition of protease inhibitor (Pi) were used with the ratios of 1:1, 1:3, and 1:5. Fetal cotyledons removed from the placenta have undergone mechanical disruption, incubation, sonication, and centrifugation. The supernatant was retained and quantified with Bradford assay to determine the total protein yield based on the standard curve of bovine serum albumin (BSA). There was a statistically significant different between buffer ratio (p<0.5) in RIPA and RIPA with addition of protease inhibitor buffers. RIPA buffer with the ration of 1:1 gave the best total protein yield (194.880±15.089 mg/g). As a conclusion, there was a significant interaction between buffer types and have greatly enhanced the total protein yield obtained from placental cotyledons of Kedah-Kelantan cattle.
References
Arachea, B. T., Z. Sun, N. Potente, R. Malik, D. Isailovic, & R. E. Viola. 2012. Detergent selection for enhanced extraction of membrane proteins. Protein Expression and Purification 86: 12-20. https://doi.org/10.1016/j.pep.2012.08.016
Arima, Y. & R. D. Bremel. 1983. Purification and characterization of bovine placental lactogen. Endocrinology 113: 2186-2194. https://doi.org/10.1210/endo-113-6-2186
Auld, D. S. 1995. Removal and replacement of metal ions in metallopeptidases. Methods in Enzymology 248: 228-242. https://doi.org/10.1016/0076-6879(95)48016-1
Azadmanesh, K., Z. S. Norouzfa, A. Sohrabi, Z. Safaie-Naraghi, A. Moradi, P. Yaghmaei, M. M. Naraghi, A. Arashkia, & A. Eslamifar. 2012. Characterization of human herpes virus 8 genotypes in kaposi’s sarcoma patients in Tehran, Iran. International Journal of Molecular Epidemiology and Genetics 3: 144-152.
Barbato, O., N. Melo de Sousa, V. L. Barile, C. Canali, & J-F. Beckers. 2013. Purification of pregnancy-associated glycoproteins from late-pregnancy Bubalus bubalis placentas and development of a radioimmunoassay for pregnancy diagnosis in water buffalo females. BMC Veterinary Research 9: 89. https://doi.org/10.1186/1746-6148-9-89
Beriot, M., A. F. Tchimbou, O. Barbato, J-F. Beckers, & N. M. de Sousa. 2014. Identification of pregnancy-associated glycoproteins and a-fetoprotein in fallow deer (Dama dama) placenta. Acta Veterinaria Scandinavica 4: 56. https://doi.org/10.1186/1751-0147-56-4
Brennan, J. 2018. Components of Lysis Buffers | Sciencing. https://sciencing.com/components-lysis-buffers-8148370.html. [9 December 2018]
Chaves, C. D. M. E. S., R. L. Dias da Costa , K. M. R. Duarte , D.C. Machado , C. C. Paro de Paz, & R. T. Beltrame. 2017. Visual ELISA for detection of pregnancy-associated glycoproteins (PAGs) in ewe serum. Theriogenology 97: 78-82. https://doi.org/10.1016/j.theriogenology.2017.04.026
Chandra, R. & S. A. Endow. 1993. Microtubule Motor Protein Expression in Bacteria. In: J. M. Scholey (Ed.), Motility Assays for Motor Proteins. Academic Press Inc, San Diego, California. p. 119-122.
El Amiri, B., N. M. Sousa, A. A. Oxiley, D. Hadarbach, & J-F. Beckers. 2015. Pregnancy-associated glycoprotein (PAG) concentration in plasma and milk samples for early pregnancy diagnosis in Lacaune dairy sheep. Res. Vet. Sci. 99: 30-36. https://doi.org/10.1016/j.rvsc.2014.12.016
Friedrich, M. & W. Holtz. 2010. Establishment of an ELISA for measuring bovine pregnancy-associated glycoprotein in serum or milk and its application for early pregnancy detection. Reprod. Dom. Anim. 45:142-146. https://doi.org/10.1111/j.1439-0531.2008.01287.x
Fu, Q., J. Cheng, Y. Gao,Y. Zhang, X. Chen, & J. Xie. 2015. Protease- activated receptor 4: a critical participator in inflammatory response. Inflammation 38: 886-895. https://doi.org/10.1007/s10753-014-9999-6
G-Biosciences. 2012. What are Protease Inhibitors and How Do They Work?. https://info.gbiosciences.com/blog/bid/160009/what-are-protease-inhibitors-and-how-do-they-work. [9 December 2018]
G-Biosciences. 2018. Protease and Phosphatase Inhibitors, Enzymes and Assays Handbook and Selection Guide. G-Biosciences.
Geissler, M., J. A. Beauregard, I. Charlebois, S. Isabel, F. Normandin, B. Voisin, M. Boissinot, M. G. Bergeron, & T. Veres. 2011. Extraction of nucleic acids from bacterial spores using bead-based mechanical lysis on a plastic chip. Engineering in Life Sciences 11: 174-181. https://doi.org/10.1002/elsc.201000132
Golemis, E. & P. D. Adam. 2005. Protein-Protein Interactions: A Molecular Cloning Manual (Second). CHSL Press, Philadelphia, Pennsylvania.
Gottschalk, U. 2014. Process Scale Purification of Antibodies. 2nd Ed. John Wiley & Sons, Inc.
Grabski, A. C. 2009. Chapter 18 advances in preparation of biological extracts for protein purification. Methods in Enzymology 463: 285-303. https://doi.org/10.1016/S0076-6879(09)63018-4
Helmenstine, A. M. 2018. Glycoprotein Definition and Function. https://www.thoughtco.com/glycoprotein-definition-and-function-4134331 [10 November 2018]
Klisch, K., A. Boos, M. Friedrich, K. Herzog, M. Feldmann, N. M. Sousa, J-F. Beckers, R. Leiser, & G. Schuler. 2006. The glycosylation of pregnancy-associated glycoproteins and prolactin-related protein-I in bovine binucleate trophoblast giant cells changes before parturition. Reproduction. 132: 791-798. https://doi.org/10.1530/REP-06-0040
Kurien, B. T. & R. H. Scofield. 2015. Western blotting: Methods and protocols. 1312: 17-30. https://doi.org/10.1007/978-1-4939-2694-7
Majewska, M., G. Panasiewicz, & B. Szafranska. 2011 Pregnancy-associated glycoprotein (PAG) family localized in chorionic cells within the epitheliochorial/diffuse placenta of the alpaca (Lama pacos). Acta Histochemica. 113: 570-577. https://doi.org/10.1016/j.acthis.2010.06.002
Piechotta, M., J. Bollwein, M. Friedrich, T. Heilkenbrinker, C. Passavant, J. Branen, G. Sasser, M. Hoedmaker, & H. Bollwein. 2011. Comparison of commercial ELISA blood test s for early pregnancy detection in dairy cows. J. Reprod. Dev. 57:72-75. https://doi.org/10.1262/jrd.10-022T
Ritchie, C. 2013. Protease Inhibitors: Materials and Methods. Labome. 3: 169. https://doi.org/10.13070/mm.en.3.169
Romano, J. E. & J. E. Larson. 2010. Accuracy of pregnancy specific protein-B test for early pregnancy diagnosis in dairy cattle. Theriogenology 74: 932-939. https://doi.org/10.1016/j.theriogenology.2010.04.018
Sepehrimanesh, M., & N. Kazemipour. 2015. Relationship between the types of the extraction buffer with quality of the 2-dimensional electrophoresis proteomic map. Journal of Cytology and Molecular Biology 2: 2-4.
Sharpe-Timms, K. L., H. Eiler, W. C. Cullen, F. M. Hopkins. 1989. Morphometric analysis of collagen in gestational and retained bovine placentomes. Theriogenology 32: 485-491. https://doi.org/10.1016/0093-691X(89)90015-0
Stetsenko, A., & A. Guskov. 2017. An overview of the top ten detergents used for membrane protein crystallization. Crystals 7: 197. https://doi.org/10.3390/cryst7070197
Takahashi, T., K. Hayashi, & M. Hosoe. 2013. Biology of the placental proteins in domestic ruminants: expression, proposed roles and practical applications. Japan Agric. Res. Quat. 47:43-51. https://doi.org/10.6090/jarq.47.43
Telugu, B. P., M. O. Palmier MO, S. R. Van Doren, & J. A. Green. 2010. An examination of the proteolytic activity for bovine pregnancy-associated glycoproteins 2 and 12. Biological Chemistry 391: 259-270. https://doi.org/10.1515/bc
Touzard, E., P. Reinaud, O. Dubois, C. Guyader-Joly, P. Humblot, C. Ponsart & G. Charpigny. 2013. Specific expression patterns and cell distribution of ancient and modern PAG in bovine placenta during pregnancy. Reproduction 146: 347-362. https://doi.org/10.1530/REP-13-0143
Vaganan, M. M., S. Sarumathi, A. Nandakumar, I. Ravi, & M. M. Mustaffa. 2015. Evaluation of different protein extraction methods for banana (Musa spp.) root proteome analysis by two-dimensional electrophoresis. Indian Journal of Biochemistry and Biophysics 52: 101-106.
Wallace, R. M., K. G. Pohler, M. F. Smith, & J. A. Green. 2015. Placental PAGs: gene origins, expression patterns, and use as markers of pregnancy. Reproduction 149: 115-126. https://doi.org/10.1530/REP-14-0485
Zhao, P., M. Metcalf, & N. W. Bunnett. 2014. Biased signaling of protease- activated receptors. Frontiers in Endocrinology 5: 67. https://doi.org/10.3389/fendo.2014.00067
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